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I've already shared my opinion that the earliest episodes of Trigun are some of the weakest and the show would objectively be better off if you cut the first two or so out, but I think that episode 3 is genuinely good and episode 4 is a direct 1:1 adaptation of something that happens in the manga. The problem is that episodes 3 and 4 don't really have a good place in the plot nor' do they have any significance to later characters so they're best suited for the beginning, but neither of those episodes nor' episode 5 are really good for getting the proper gist of the characters.
When the manga opened with the events of episode 5 I was somewhat confused because things were extremely hastily explained and it felt like the author was trying to rush things, which is my biggest problem with the manga in general: the paneling is awful and it makes the events feel too fast, and it makes it too hard to understand what's happening.
I just finished Maximum 33 of the manga series, and while I'm certainly enjoying the experience a lot, I simply cannot understand what is happening or what the author is trying to convey in half of the panels. I LOVE the art style, and the page spreads are absolutely breathtaking, but in average fashion I simply cannot grasp what things are supposed to be. Not only that, but the vagueness of dialogue boxes and who's speaking them (speech bubbles not having directions pointing to whomever is speaking, or extremely vague arrows), as well as the fact that the manga switches between the past, future, present, dream sequences and schizo moments extremely quickly and on a very regular basis.
(Spoilers for the manga on this section)
There was a whole sequence in which the Hornfreak uses his frequencies to blow up something that was in the sky during a big villain moment. Apparently this was a betrayal of one of the Gung-Ho Guns, but nowhere in any previous panels or chapters did I see one of the Guns using some kind of flying machine? Zazie the Beast was using bugs to spy on people previously, and it was implied and somewhat shown that he was controlling a Sandworm off in the background, but the Sandworm doesn't fly and it's very clearly something artificial that Hornfreak destroyed.
So... what was it? I don't know. I've reread the section and examined all of the panels and as far as I can tell he just blows up... "something" that affects Zazie, and counts as a serious betrayal.
Maybe I'm just going insane, but it's a really cool and badass moment that was wasted because I just cannot understand what is happening half of the time.
Characters like Wolfwood just kind of show up and the fact that he's suspicious and mysterious is literally shoved in your face the same fucking book you meet him in, which really dampens a lot of his cool scenes and moments later because the fact that he is suspicious isn't treated like something the reader should wonder about. There's no hints or foreshadowing, there's no clues to find or questions to answer-- it just sort of happens.
The same could be said for a LOT of the mysteries that the anime presents. It's more straightforward, but I like being able to wonder and ask questions about the media I'm consuming as I'm consuming it. The manga showing you all of its cards the second it gets them isn't good writing.
This means that moments lose impact, lines lose weight, scenes become somewhat empty. It becomes too easy to sort of glaze over the blur of movement lines and random incoherent shapes and objects during some sort of fight scene and lose track of what's actually happening. It's a flaw of the paneling and the sheer detail in extremely small panels, as well as the fact that it's in black-and-white and when everything becomes wooshy motion lines, it gets hard to follow stuff.
All of this paired with the already breakneck pace of the manga makes it so that there's no real intrigue or mystery or anything of the sort. Sure, I can't tell what's happening, but not in the good way. This is something that the anime fixes for the most part, as the fact that there are episodes that serve to worldbuild and expand on character traits, backstories, etc. means that it's a lot easier to follow the story when things start to get really thick.
Is the manga bad? Absolutely not, and I think it has a really healthy relationship with the show, as they both have reasons to watch/ read them separately, as well as part of the same "franchise" so-to-speak. The manga is certainly more in-depth and is hugely more mature, gory, and vicious, but it's hard to follow a lot of the time and I think there are a lot of things that the anime does better, narrative-wise.